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| OutSimpleCo (const OutSimpleCo &) |
| | OutSimpleCo (const char *refr, int, int, int, int) |
| | This constructor takes a string containing a label, and four integers a, b, c, and d which give the indices of the atoms involved in the out-of-plane angle abcd.
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| | OutSimpleCo (const Ref< KeyVal > &) |
| | The KeyVal constructor.
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| const char * | ctype () const |
| | Always returns the string "OUT".
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double | radians () const |
| | Returns the value of the angle abc in radians.
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double | degrees () const |
| | Returns the value of the angle abc in degrees.
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| double | preferred_value () const |
| | Returns the value of the angle abc in degrees.
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| | SimpleCo (int, const char *=0) |
| | This constructor takes an integer argument which is the number of atoms needed to describe the coordinate.
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| SimpleCo (const Ref< KeyVal > &, int natom) |
| | The KeyVal constructor requires the number of atoms.
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int | natoms () const |
| | Returns the number of atoms in the coordinate.
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int | operator[] (int i) const |
| | Returns the index of the i'th atom in the coordinate.
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| void | save_data_state (StateOut &) |
| | Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them.
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| SimpleCo (StateIn &) |
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virtual int | operator== (SimpleCo &) |
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int | operator!= (SimpleCo &u) |
| double | force_constant (Ref< Molecule > &) |
| | Returns an approximate force constant (a la Almlof).
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| void | update_value (const Ref< Molecule > &) |
| | Recalculates the value of the coordinate based on the geometry in the Molecule.
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| void | bmat (const Ref< Molecule > &, RefSCVector &bmat, double coef=1.0) |
| | Fill in a row of the B matrix.
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virtual double | calc_force_con (Molecule &)=0 |
| | Calculates an approximate force constant and returns it's value.
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| virtual double | calc_intco (Molecule &, double *=0, double=1)=0 |
| | Calculate the value of the coordinate based on what's in Molecule.
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| void | print_details (const Ref< Molecule > &, std::ostream &=ExEnv::out0()) const |
| | Print the coordinate.
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| int | equivalent (Ref< IntCoor > &) |
| | Tests to see if two coordinates are equivalent to each other.
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| IntCoor (StateIn &) |
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| IntCoor (const IntCoor &) |
| | IntCoor (const char *label=0) |
| | This constructor takes a string containing a label for the internal coordinate.
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| | IntCoor (const Ref< KeyVal > &) |
| | The KeyVal constructor.
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virtual const char * | label () const |
| | Returns the string containing the label for the internal coordinate.
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virtual double | value () const |
| | Returns the value of the coordinate in atomic units or radians.
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virtual void | set_value (double) |
| | Sets the value of the coordinate in atomic units or radians.
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| virtual void | print (std::ostream &o=ExEnv::out0()) const |
| | Print information about the coordinate.
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SavableState & | operator= (const SavableState &) |
| void | save_state (StateOut &) |
| | Save the state of the object as specified by the StateOut object.
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| void | save_object_state (StateOut &) |
| | This can be used for saving state when the exact type of the object is known for both the save and the restore.
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| virtual void | save_vbase_state (StateOut &) |
| | Save the virtual bases for the object.
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| DescribedClass (const DescribedClass &) |
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DescribedClass & | operator= (const DescribedClass &) |
| ClassDesc * | class_desc () const throw () |
| | This returns the unique pointer to the ClassDesc corresponding to the given type_info object.
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const char * | class_name () const |
| | Return the name of the object's exact type.
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int | class_version () const |
| | Return the version of the class.
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int | lock_ptr () const |
| | Lock this object.
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int | unlock_ptr () const |
| | Unlock this object.
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void | use_locks (bool inVal) |
| | start and stop using locks on this object
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refcount_t | nreference () const |
| | Return the reference count.
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refcount_t | reference () |
| | Increment the reference count and return the new count.
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refcount_t | dereference () |
| | Decrement the reference count and return the new count.
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int | managed () const |
| void | unmanage () |
| | Turn off the reference counting mechanism for this object.
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int | managed () const |
| | Return 1 if the object is managed. Otherwise return 0.
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| Identifier | identifier () |
| | Return the Identifier for this argument.
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static void | save_state (SavableState *s, StateOut &) |
| static SavableState * | restore_state (StateIn &si) |
| | Restores objects saved with save_state.
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static SavableState * | key_restore_state (StateIn &si, const char *keyword) |
| | Like restore_state, but keyword is used to override values while restoring.
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static SavableState * | dir_restore_state (StateIn &si, const char *objectname, const char *keyword=0) |
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| SavableState (const SavableState &) |
| | SavableState (StateIn &) |
| | Each derived class StateIn CTOR handles the restore corresponding to calling save_object_state, save_vbase_state, and save_data_state listed above.
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| RefCount (const RefCount &) |
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RefCount & | operator= (const RefCount &) |
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int | natoms_ |
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int * | atoms |
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char * | label_ |
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double | value_ |
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static double | bohr_conv |
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static double | radian_conv |