PeakPickerIM

A tool for peak detection in the ion mobility dimension for mzML files.

pot. predecessor tools	→ PeakPickerIM →	pot. successor tools
FileConverter		any tool operating on MS peak data (in mzML format)

This tool applies peak picking in the ion mobility dimension to raw LC-IMS-MS data. The input mzML file should contain ion mobility data in concatenated format (where each spectrum contains an ion mobility float data array).

Three peak picking methods are available:

• mobilogram: Picks peaks along the ion mobility dimension using a peak picker.
• cluster: Clusters peaks in the ion mobility dimension.
• traces: Picks peaks using ion mobility elution profiles.

The command line parameters of this tool are:

INI file documentation of this tool:

For the parameters of the algorithm section see the algorithm documentation: PeakPickerIM