Index

A

add() (boutdata.mms.SimpleTokamak method) addnoise() (in module boutdata.restart) addvar() (in module boutdata.restart) alwayswarn() (in module boutdata), [1] (in module boututils.boutwarnings) AlwaysWarning animate() (zoidberg.plot.AnimateVectorField method) AnimateVectorField (class in zoidberg.plot)

as_dict() (boutdata.data.BoutOptions method) as_tree() (boutdata.data.BoutOptions method) attributes (zoidberg.field.MagneticField attribute), [1] attributes() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) (in module boutdata), [1] (in module boutdata.collect)

B

b0xGrad_dot_Grad() (in module boutdata.mms) Bmag() (zoidberg.field.MagneticField method) (zoidberg.field.W7X_vacuum_on_demand method) boundary (zoidberg.field.MagneticField attribute), [1] bout2sonnet() (in module boutdata.griddata) bout_type() (boututils.datafile.DataFile method) BoutArray (class in boutdata), [1] (class in boututils.boutarray) boutdata module, [1] BoutData() (in module boutdata.data) boutdata.collect module boutdata.data module boutdata.griddata module boutdata.mms module boutdata.pol_slice module boutdata.processor_rearrange module boutdata.restart module boutdata.shiftz module BoutOptions (class in boutdata.data) BoutOptionsFile (class in boutdata.data) BoutOutputs (class in boutdata.data) boututils module, [1] boututils.boutarray module boututils.boutwarnings module boututils.calculus module boututils.datafile module boututils.fft_integrate module

boututils.linear_regression module boututils.plotdata module boututils.run_wrapper module boututils.showdata module bracket() (in module boutdata.mms) build_and_log() (in module boutdata), [1] (in module boututils.run_wrapper) Bxfunc() (zoidberg.field.CurvedSlab method) (zoidberg.field.DommaschkPotentials method) (zoidberg.field.GEQDSK method) (zoidberg.field.MagneticField method) (zoidberg.field.Slab method) (zoidberg.field.SmoothedMagneticField method) (zoidberg.field.VMEC method) (zoidberg.field.W7X_vacuum method) (zoidberg.field.W7X_vacuum_on_demand method) (zoidberg.field.W7X_VMEC method) Bxyzfunc() (zoidberg.field.W7X_vacuum_on_demand method) Byfunc() (zoidberg.field.CurvedSlab method) (zoidberg.field.DommaschkPotentials method) (zoidberg.field.GEQDSK method) (zoidberg.field.MagneticField method) (zoidberg.field.Slab method) (zoidberg.field.SmoothedMagneticField method) (zoidberg.field.VMEC method) (zoidberg.field.W7X_vacuum method) (zoidberg.field.W7X_vacuum_on_demand method) (zoidberg.field.W7X_VMEC method) Bzfunc() (zoidberg.field.CurvedSlab method) (zoidberg.field.DommaschkPotentials method) (zoidberg.field.GEQDSK method) (zoidberg.field.MagneticField method) (zoidberg.field.Slab method) (zoidberg.field.VMEC method) (zoidberg.field.W7X_vacuum method) (zoidberg.field.W7X_vacuum_on_demand method) (zoidberg.field.W7X_VMEC method)

C

CaseInsensitiveDict (class in boutdata.data) CD() (zoidberg.field.DommaschkPotentials method) cfunct() (zoidberg.field.VMEC method) change_grid() (in module boutdata.restart) circle() (in module zoidberg.rzline) close() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) closestPoint() (zoidberg.rzline.RZline method)

CN() (zoidberg.field.DommaschkPotentials method) coil() (zoidberg.field.RotatingEllipse method) (zoidberg.field.StraightStellarator method) collect() (in module boutdata), [1] (in module boutdata.collect) COMMENT_REGEX (boutdata.data.BoutOptionsFile attribute) create() (in module boutdata.restart) create_cache() (in module boutdata.collect) create_processor_layout() (in module boutdata.processor_rearrange) CurvedSlab (class in zoidberg.field)

D

D() (zoidberg.field.DommaschkPotentials method) D2DX2() (in module boutdata.mms) D2DXDY() (in module boutdata.mms) D2DXDZ() (in module boutdata.mms) D2DY2() (in module boutdata.mms) D2DYDZ() (in module boutdata.mms) D2DZ2() (in module boutdata.mms) DataFile (class in boututils.datafile) DataFile_HDF5 (class in boututils.datafile) DataFile_netCDF (class in boututils.datafile) ddt() (in module boutdata.mms) DDX() (in module boutdata.mms) DDY() (in module boutdata.mms) DDZ() (in module boutdata.mms) defaultwarn() (in module boututils.boutwarnings)

Delp2() (in module boutdata.mms) Delp4() (in module boutdata.mms) deriv() (in module boututils.calculus) deriv2D() (in module boututils.calculus) determineNumberOfCPUs() (in module boutdata), [1] (in module boututils.run_wrapper) dimensions (boutdata.data.BoutOutputs property) dimensions() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) (in module boutdata.collect) dims_from_type() (boutdata.BoutArray static method), [1] (boututils.boutarray.BoutArray static method) distance() (zoidberg.rzline.RZline method) Div_par() (in module boutdata.mms) DommaschkPotentials (class in zoidberg.field)

E

equallySpaced() (zoidberg.rzline.RZline method) evaluate() (boutdata.data.BoutOptionsFile method) evaluate_scalar() (boutdata.data.BoutOptions method)

evolvingVariables() (boutdata.data.BoutOutputs method) exprMag() (in module boutdata.mms) exprToStr() (in module boutdata.mms)

F

fci_to_vtk() (in module zoidberg.zoidberg) fft_integrate() (in module boututils.fft_integrate) field_direction() (zoidberg.field.MagneticField method) field_values() (zoidberg.field.W7X_vacuum class method) (zoidberg.field.W7X_VMEC method) FieldTracer (class in zoidberg.fieldtracer) FieldTracerReversible (class in zoidberg.fieldtracer) FieldTracerWeb (class in zoidberg.fieldtracer)

findFiles() (in module boutdata.collect) findIndex() (zoidberg.poloidal_grid.RectangularPoloidalGrid method) (zoidberg.poloidal_grid.StructuredPoloidalGrid method) findVar() (in module boutdata.collect) flt (zoidberg.fieldtracer.FieldTracerWeb property) follow_field_lines() (zoidberg.fieldtracer.FieldTracer method) (zoidberg.fieldtracer.FieldTracerReversible method) (zoidberg.fieldtracer.FieldTracerWeb method) format_time() (in module zoidberg.progress)

G

GEQDSK (class in zoidberg.field) get() (boututils.datafile.DataFile method) get_attribute() (boutdata.data.BoutOutputs method) get_bool() (boutdata.data.BoutOptions method) get_dims_type() (boutdata.BoutArray static method), [1] (boututils.boutarray.BoutArray static method) get_file_attribute() (boutdata.data.BoutOutputs method) get_metric() (in module zoidberg.zoidberg) get_processor_layout() (in module boutdata.processor_rearrange) getB() (zoidberg.field.W7X_vacuum_on_demand method)

getConfig() (zoidberg.fieldtracer.FieldTracerWeb method) getCoordinate() (zoidberg.poloidal_grid.RectangularPoloidalGrid method) (zoidberg.poloidal_grid.StructuredPoloidalGrid method) getmpirun() (in module boututils.run_wrapper) getPoloidalGrid() (zoidberg.grid.Grid method) getSection() (boutdata.data.BoutOptions method) Grad_par() (in module boutdata.mms) Grid (class in zoidberg.grid) grid_annulus() (in module zoidberg.poloidal_grid) grid_elliptic() (in module zoidberg.poloidal_grid) gridcontourf() (in module boutdata.griddata)

H

handle (boututils.datafile.DataFile_HDF5 attribute) (boututils.datafile.DataFile_netCDF attribute)

I

impl (boututils.datafile.DataFile attribute)

integrate() (in module boututils.calculus)

K

keys() (boutdata.data.BoutOptions method) (boutdata.data.BoutOutputs method) (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

L

Laplace() (in module boutdata.mms) Laplace_par() (in module boutdata.mms) Laplace_perp() (in module boutdata.mms) launch() (in module boutdata), [1] (in module boututils.run_wrapper) launch_safe() (in module boutdata), [1] (in module boututils.run_wrapper) line_from_points() (in module zoidberg.rzline) line_from_points_alphashape() (in module zoidberg.rzline) line_from_points_convex_hull() (in module zoidberg.rzline)

line_from_points_fast() (in module zoidberg.rzline) line_from_points_poly() (in module zoidberg.rzline) line_from_points_two_opt() (in module zoidberg.rzline) linear_regression() (in module boututils.linear_regression) list() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) list_file_attributes() (boutdata.data.BoutOutputs method) (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

M

magnetic_axis() (zoidberg.field.W7X_vacuum method) MagneticField (class in zoidberg.field) make_maps() (in module zoidberg) (in module zoidberg.zoidberg) make_surfaces() (in module zoidberg.zoidberg) Metric (class in boutdata.mms) metric() (boutdata.mms.ShapedTokamak method) (boutdata.mms.SimpleTokamak method) (zoidberg.grid.Grid method) (zoidberg.poloidal_grid.RectangularPoloidalGrid method) (zoidberg.poloidal_grid.StructuredPoloidalGrid method) module boutdata, [1] boutdata.collect boutdata.data boutdata.griddata boutdata.mms boutdata.pol_slice boutdata.processor_rearrange boutdata.restart boutdata.shiftz boututils, [1] boututils.boutarray boututils.boutwarnings boututils.calculus boututils.datafile boututils.fft_integrate boututils.linear_regression boututils.plotdata boututils.run_wrapper boututils.showdata zoidberg zoidberg.boundary zoidberg.field zoidberg.fieldtracer zoidberg.grid zoidberg.plot zoidberg.poloidal_grid zoidberg.progress zoidberg.rzline zoidberg.zoidberg

N

N() (zoidberg.field.DommaschkPotentials method) ndims() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

NoBoundary (class in zoidberg.boundary) numberOfPoloidalGrids() (zoidberg.grid.Grid method)

O

old_div() (in module boututils.calculus) open() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

outside() (zoidberg.boundary.NoBoundary method) (zoidberg.boundary.PolygonBoundaryXZ method) (zoidberg.boundary.RectangularBoundaryXZ method)

P

parallel_slice_field_name() (in module zoidberg.zoidberg) path() (boutdata.data.BoutOptions method) plasma_field() (zoidberg.field.W7X_vacuum method) plot() (zoidberg.poloidal_grid.PoloidalGrid method) (zoidberg.rzline.RZline method) plot_3d_field_line() (in module zoidberg.plot) plot_backward_map() (in module zoidberg.plot) plot_forward_map() (in module zoidberg.plot) plot_poincare() (in module zoidberg.plot) plot_streamlines() (in module zoidberg.plot) plotdata() (in module boututils.plotdata)

pol_slice() (in module boutdata.pol_slice) PoloidalGrid (class in zoidberg.poloidal_grid) PolygonBoundaryXZ (class in zoidberg.boundary) pop() (boutdata.data.BoutOptions method) position() (zoidberg.rzline.RZline method) positionPolygon() (zoidberg.rzline.RZline method) pressure() (zoidberg.field.GEQDSK method) (zoidberg.field.MagneticField method) (zoidberg.field.W7X_vacuum_on_demand method) processor_layout (class in boutdata.processor_rearrange) processor_layout_ (in module boutdata.processor_rearrange) Progress (class in zoidberg.progress)

R

R (zoidberg.poloidal_grid.PoloidalGrid attribute) (zoidberg.poloidal_grid.RectangularPoloidalGrid attribute) (zoidberg.poloidal_grid.StructuredPoloidalGrid attribute) (zoidberg.rzline.RZline attribute) read() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) read_file_attribute() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) read_vmec_file() (zoidberg.field.VMEC method) recalculate_xyz() (boutdata.data.BoutOptionsFile method) rectangular_grid() (in module zoidberg.grid) RectangularBoundaryXZ (class in zoidberg.boundary) RectangularPoloidalGrid (class in zoidberg.poloidal_grid) redistribute() (boutdata.data.BoutOutputs method) (in module boutdata.restart) regions() (in module boutdata.griddata) rename() (boutdata.data.BoutOptions method)

resize() (in module boutdata.restart) resize3DField() (in module boutdata.restart) resizeY() (in module boutdata.restart) resizeZ() (in module boutdata.restart) Rfunc() (zoidberg.field.CurvedSlab method) (zoidberg.field.DommaschkPotentials method) (zoidberg.field.GEQDSK method) (zoidberg.field.MagneticField method) (zoidberg.field.RotatingEllipse method) (zoidberg.field.Screwpinch method) (zoidberg.field.SmoothedMagneticField method) (zoidberg.field.VMEC method) (zoidberg.field.W7X_vacuum method) (zoidberg.field.W7X_vacuum_on_demand method) (zoidberg.field.W7X_VMEC method) rotate() (in module boutdata.griddata) RotatingEllipse (class in zoidberg.field) Rvalue() (zoidberg.rzline.RZline method) RZline (class in zoidberg.rzline)

S

scalevar() (in module boutdata.restart) Screwpinch (class in zoidberg.field) sections() (boutdata.data.BoutOptions method) Sfunc() (zoidberg.field.DommaschkPotentials method) sfunct() (zoidberg.field.VMEC method) shape (zoidberg.grid.Grid attribute) shaped_line() (in module zoidberg.rzline) ShapedTokamak (class in boutdata.mms) shell() (in module boutdata), [1] (in module boututils.run_wrapper) shell_safe() (in module boutdata), [1] (in module boututils.run_wrapper) shift_v3_to_v4() (in module boutdata.restart) shiftz() (in module boutdata.shiftz) showdata() (in module boututils.showdata)

SimpleTokamak (class in boutdata.mms) simpson_integrate() (in module boututils.calculus) simpson_matrix() (in module boututils.calculus) size() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) Slab (class in zoidberg.field) slice() (in module boutdata.griddata) smooth_field_line() (zoidberg.field.SmoothedMagneticField method) SmoothedMagneticField (class in zoidberg.field) StraightStellarator (class in zoidberg.field) StructuredPoloidalGrid (class in zoidberg.poloidal_grid) sync() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

T

test() (in module boututils.plotdata) test_integrate() (in module boututils.fft_integrate) theta (zoidberg.rzline.RZline attribute)

trace_poincare() (in module zoidberg.fieldtracer) trySimplify() (in module boutdata.mms) type_from_dims() (boutdata.BoutArray static method), [1] (boututils.boutarray.BoutArray static method)

U

U() (zoidberg.field.DommaschkPotentials method) U_hat() (zoidberg.field.DommaschkPotentials method) update() (zoidberg.progress.Progress method)

update_metric_names() (in module zoidberg.zoidberg) update_progress() (in module zoidberg.progress) upscale() (in module zoidberg.zoidberg)

V

V() (zoidberg.field.DommaschkPotentials method) V_hat() (zoidberg.field.DommaschkPotentials method) VALID_COMMENTS (boutdata.data.BoutOptionsFile attribute)

values() (boutdata.data.BoutOptions method) VMEC (class in zoidberg.field) Vpar_Grad_par() (in module boutdata.mms)

W

W7X_vacuum (class in zoidberg.field) W7X_vacuum_on_demand (class in zoidberg.field) W7X_VMEC (class in zoidberg.field) write() (boutdata.data.BoutOptionsFile method) (boutdata.mms.ShapedTokamak method) (boutdata.mms.SimpleTokamak method) (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method)

write_Bfield_to_vtk() (in module zoidberg.zoidberg) write_file_attribute() (boututils.datafile.DataFile method) (boututils.datafile.DataFile_HDF5 method) (boututils.datafile.DataFile_netCDF method) write_maps() (in module zoidberg) (in module zoidberg.zoidberg)

Z

Z (zoidberg.poloidal_grid.PoloidalGrid attribute) (zoidberg.poloidal_grid.RectangularPoloidalGrid attribute) (zoidberg.poloidal_grid.StructuredPoloidalGrid attribute) (zoidberg.rzline.RZline attribute) zoidberg module zoidberg.boundary module zoidberg.field module zoidberg.fieldtracer module

zoidberg.grid module zoidberg.plot module zoidberg.poloidal_grid module zoidberg.progress module zoidberg.rzline module zoidberg.zoidberg module Zvalue() (zoidberg.rzline.RZline method)